大口黑鲈MyoD基因结构和单核苷酸多态性位点的筛选

Molecular cloning and identification of single nucleotide polymorphisms of MyoD in largemouth bass(Micropterus salmoides

  • 摘要: 采用PCR技术和基因组步移技术从大口黑鲈基因组DNA中扩增得到MyoD基因及其5′调控区序列。该基因序列全长3 797 bp,其中5′调控区长1 077 bp,MyoD基因转录区由3个外显子(分别为591、81和78 bp)和2个内含子(分别为1 077和486 bp)组成。5′调控区含有与肌肉特异性基因转录密切相关的转录调控元件E box、肌细胞增强因子2(MEF2)、肌肉特异性金属硫蛋白结合位点(MTBF)及一些转录反应调控元件(TATA box、OCAAT box、OCT1、PRE、AP4、Pit1)。运用PCR-SSCP技术和直接测序法进行大口黑鲈MyoD基因SNP位点筛选,结果表明MyoD基因序列中存在7个突变点,均位于内含子上。养殖群体中这7个突变点分析结果显示突变比例范围在0.042~0.353之间。本研究结果为SNPs位点与大口黑鲈生长性能关联分析奠定了基础。

     

    Abstract: In present research, the sequences of MyoD gene and 5′-flanking region are amplified from DNA isolated from the largemouth bass by using PCR and GeneWalking technique. A total of 3797 bp sequence of MyoD gene and 5′-flanking region was obtained.The MyoD encoding gene consisted of three extrons(591 bp,81 bp and 78 bp respectively)and two introns(1077 bp and 486 bp). Sequence analysis of 5′-flanking region of MyoD gene revealed that it contained putative muscle growth response elements such as E-boxes , myocyte enhancer factor 2 (MEF2), muscle-specific Mt binding site (MTBF). TATA boxes, Octamer-binding factor 1(OCT1), activator protein 4 (AP4) and OCAAT box were also detected. 7 SNP sites in introns were identified from MyoD gene by using PCR-SSCP technique and sequencing, however no polymorphism existed in extron and 5′-flanking region. The percentage of SNPs is between 0.042-0.353 in largemouth bass. These SNPs might be useful for a further study on MyoD gene’s relation to production performance in largemouth bass.

     

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