基于牡蛎疱疹病毒DNA聚合酶基因的巢式PCR检测方法的建立及应用
The development and application of nested PCR detection method for Ostreid herpesvirus-1 based on DNA polymerase gene
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                            摘要: 为了建立适用于OsHV-1不同变异株的检测方法,在牡蛎疱疹病毒(OsHV-1)3个变异株全基因组序列比对的基础上,筛选到牡蛎疱疹病毒基因组中高度保守的DNA聚合酶(DNA polymerase)基因,据此设计巢式PCR引物,优化PCR反应体系和条件,建立了基于OsHV-1 DNA聚合酶基因的巢氏PCR检测方法(P-nPCR检测方法),利用P-nPCR与CnPCR检测方法对不同年份和宿主来源的OsHV-1疑似感染样本进行检测。结果显示,PnPCR检测方法能稳定地检出100 拷贝/μL的病毒DNA;P-nPCR较C-nPCR检测方法具有更强的特异性和更高的检出率。研究表明,本研究建立的P-nPCR检测方法适用于OsHV-1不同变异株的检测,可为该病毒的检测和流行病学调查提供可靠的技术支持。Abstract: In order to establish a detection method suitable for different strains of OsHV-1,the primers were designed based on the nuclei acid sequence of the conserved DNA polymerase of OsHV-1. A nested PCR detection method (P-nPCR) was established by optimization of the annealing temperatures of the primers and protocols of PCR. Then, both P-nPCR and C-nPCR were employed to test the infection status of the samples collected from different years and hosts. Our results indicated that the detection limits of the P-nPCR detection method was about 100 copies/μL of recombinant plasmid containing OsHV-1 genes. P-nPCR was more specific than C-nPCR in the detection of different variants of OsHV-1, and resulted in a higher prevalence of OsHV-1 for the same samples. In conclusion, a P-nPCR detection method was developed to detect different variants of OsHV-1 infection. The high specificity of P-nPCR to OsHV-1 ensured that different variants of OsHV-1 could be detected as early as possible, which will provide reliable technical support for the detection and epidemiology studies of OsHV-1.
 
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