牡蛎疱疹病毒魁蚶株交叉引物等温扩增检测方法的建立及初步应用

Establishment and application of a cross priming isothermal amplification technique for detection of SB strain of Ostreid herpesvirus-1

  • 摘要: 为建立牡蛎疱疹病毒魁蚶株快速、灵敏、准确和操作简便的检测方法,实验根据已测序完成的OsHV-1-SB全基因组序列,选择其保守区域,建立了交叉引物等温扩增检测方法,并对反应温度、dNTPs、Mg2+浓度和反应时间进行了优化。结果显示,最佳温度为63 ℃,反应时间为60 min,dNTPs浓度为1.4 mmol/L,Mg2+浓度为6 mmol/L。该方法检测灵敏度为30 拷贝的质粒DNA,并且特异性较强,与贝类常见病原急性病毒性坏死病毒、鲍鱼疱疹病毒、派琴虫、包纳米虫、马尔泰虫以及对虾白斑综合征病毒和副溶血弧菌均无交叉反应。使用实验建立的CPA检测方法对2012年分别采自韩国庆尚南道、山东长岛、辽宁大连共计22份OsHV-1-SB感染情况未知的魁蚶样品进行了检测。研究表明,实验所建立的OsHV-1-SB的CPA检测方法简单、快速、灵敏且特异性强。由于其检测结果可通过简单离心或者向反应管中加入核酸荧光染料 GeneFinderTM进行肉眼观察,所以可以在沿海贝类养殖厂及条件简陋的实验室使用,具有较好的应用前景。

     

    Abstract: In order to establish a simple, rapid, sensitive and specific method for detection of the SB strain of Ostreid herpesvirus-1(OsHV-1), a cross priming amplification(CPA)assay was developed based on primers developed according to the conserved regions selected across the whole genome sequences of the SB strain of OsHV-1.Then the reaction temperature, time and concentrations of dNTPs and Mg2+ were optimized.Our results showed the optimum temperature and time of the assay were 63 ℃ and 60 min, and the optimum concentration of dNTP and Mg2+were 1.4 mmol/L and 6 mmol/L respectively.The CPA assay was highly sensitive with detection limit approximately 30 copies recombinant plasmid DNA per μL.The assay was also highly specific for OsHV-1-SB detection, with no cross-reactions was found when acute viral necrosis virus, abalone herpes viruses, Perkinsus sp., Bonamia sp., Martelia sp., white spot syndrome virus and Vibrio parahaemolyticus were used as controls.The prevalence of OsHV-1-SB in 22 blood clams, Scapharca broughtonii, collected from Gyeongsangnam-do in Korea, Shandong and Liaoning Province in China were detected with the CPA assay established in this study.The results showed that the CPA assay is a simple, rapid, sensitive, specific and reliable technique.Additionally, since the results of CPA assay could be read directly through centrifugation of the reaction mix or adding GeneFinderTM to the mix, this assay can be used in shellfish farms and local laboratories with poor conditions.

     

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